imputation-bot

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Your personal bot for Michigan Imputation Server and TOPMed Imputation Server.

Requirements

You will need the following things properly installed on your computer.

  • Java 8 or higher

imputation-bot works on Linux, macOS and Windows.

Download and Install

Linux or macOS

Download and install the latest version from our download page using the following commands:

curl -sL imputationbot.now.sh | bash

It will create the imputationbot executable file in the current directory. Optionally, move the imputationbot file to a directory accessible by your $PATH variable.

Test the installation with the following command:

imputationbot version

The documentation is available at http://imputationbot.readthedocs.io.

All releases are also available on Github.

Windows

Download the latest version of imputationbot-X.X.X-windows.zip from our download page.

  • Open the zip file and extract it content to a folder of choice.

  • Open the command-line, navigate to your folder where you extracted the exe file.

  • Test the installation with following command:

imputationbot version

It will output something similar to the text shown below:

imputation-bot 1.0.0 🤖
https://imputationserver.sph.umich.edu
(c) 2019-2020 Lukas Forer, Sebastian Schoenherr and Christian Fuchsberger
Built by lukas on 2020-09-01T11:31:10Z

Now you are ready to configure imputation-bot and impute your GWAS data. Read the Getting started section to learn more about how to submit your first job.