imputation-bot
Your personal bot for Michigan Imputation Server and TOPMed Imputation Server.
Requirements
You will need the following things properly installed on your computer.
- Java 8 or higher
imputation-bot works on Linux, macOS and Windows.
Download and Install
Linux or macOS
Download and install the latest version from our download page using the following commands:
curl -sL imputationbot.now.sh | bash
It will create the imputationbot
executable file in the current directory. Optionally, move the imputationbot
file to a directory accessible by your $PATH
variable.
Test the installation with the following command:
imputationbot version
The documentation is available at http://imputationbot.readthedocs.io.
All releases are also available on Github.
Windows
Download the latest version of imputationbot-X.X.X-windows.zip
from our download page.
-
Open the zip file and extract it content to a folder of choice.
-
Open the command-line, navigate to your folder where you extracted the exe file.
-
Test the installation with following command:
imputationbot version
It will output something similar to the text shown below:
imputation-bot 1.0.0 🤖
https://imputationserver.sph.umich.edu
(c) 2019-2020 Lukas Forer, Sebastian Schoenherr and Christian Fuchsberger
Built by lukas on 2020-09-01T11:31:10Z
Now you are ready to configure imputation-bot and impute your GWAS data. Read the Getting started section to learn more about how to submit your first job.